{"id":573,"date":"2013-07-12T13:59:27","date_gmt":"2013-07-12T12:59:27","guid":{"rendered":"http:\/\/nextmovesoftware.com\/blog\/?p=573"},"modified":"2015-06-22T16:58:20","modified_gmt":"2015-06-22T15:58:20","slug":"pubchem-peptide-depictions","status":"publish","type":"post","link":"https:\/\/nextmovesoftware.com\/blog\/2013\/07\/12\/pubchem-peptide-depictions\/","title":{"rendered":"PubChem peptide depictions"},"content":{"rendered":"<p>I&#8217;ve been doing some work on the peptide depictions generated by <a href=\"http:\/\/www.nextmovesoftware.com\/products\/SugarNSplice.html\">Sugar &#038; Splice<\/a> and thought it might be nice to show a variety of the more interesting structures that are present in PubChem.<\/p>\n<p>The following animated gif shows examples of cyclic peptides, disulfide bridges, D-amino acids, terminal modifications as well as main-chain and side-chain modifications. The depiction style used is that <a href=\"http:\/\/www.chem.qmul.ac.uk\/iupac\/AminoAcid\/\">recommended by IUPAC<\/a>.<a href=\"http:\/\/nextmovesoftware.com\/blog\/wp-content\/uploads\/2013\/07\/morph.gif\"><img loading=\"lazy\" decoding=\"async\" src=\"\/\/nextmovesoftware.com\/blog\/wp-content\/uploads\/2013\/07\/morph.gif\" alt=\"morph\" width=\"500\" height=\"300\" class=\"aligncenter size-full wp-image-636\" \/><\/a><\/p>\n<p><b>Note:<\/b> To create the animated gif, I combined several pngs using ImageMagick (see <a href=\"https:\/\/gist.github.com\/baoilleach\/5983218\">this gist<\/a>).<\/p>\n","protected":false},"excerpt":{"rendered":"<p>I&#8217;ve been doing some work on the peptide depictions generated by Sugar &#038; Splice and thought it might be nice to show a variety of the more interesting structures that are present in PubChem. The following animated gif shows examples of cyclic peptides, disulfide bridges, D-amino acids, terminal modifications as well as main-chain and side-chain &hellip; <a href=\"https:\/\/nextmovesoftware.com\/blog\/2013\/07\/12\/pubchem-peptide-depictions\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">PubChem peptide depictions<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"_links":{"self":[{"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/posts\/573"}],"collection":[{"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/comments?post=573"}],"version-history":[{"count":22,"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/posts\/573\/revisions"}],"predecessor-version":[{"id":1451,"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/posts\/573\/revisions\/1451"}],"wp:attachment":[{"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/media?parent=573"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/categories?post=573"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/nextmovesoftware.com\/blog\/wp-json\/wp\/v2\/tags?post=573"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}